From: Studying alcohol use disorder using Drosophila melanogaster in the era of ‘Big Data’
Fly resources | Refs | |
---|---|---|
Drosophila network resources | https://wiki.flybase.org/wiki/FlyBase:Drosophila_Network_Resources | |
Flybase | [178] | |
Bloomington Stock center | ||
Alliance of genome resources | ||
Wildtype populations of flies | ||
Drosophila genetic reference panel (DGRP) | [77] | |
Drosophila synthetic population resource (DSRP) | [75] | |
Global diversity lines | [76] | |
Genetic tools for cell-type specific next-generation sequencing | ||
INTACT | Nuclear purification | [117] |
TRAP | Translating Ribosomal Affinity Purification | |
TU or EC tagging | Labels RNA following feeding of 4-thiouracil or 5-ethynylcytosine | |
CAST-ChIP | [118] | |
DamID | Methylation-based chromatin profiling | [181] |
Relevant collections of fly strains for behavioral validation | ||
Vienna RNAi lines | [182] | |
Transgenic RNAi project | [183] | |
FlyLight | [184] | |
Gene disruption project | MiMIC and CRIMIC lines | [86] |
Relevant drosophila transcriptional data sets | ||
Updated mapping of Drosophila sequence read archive | GEO Series GSE117217 | |
Single-cell whole brain | GEO Series GSE107451 | |
Kenyon cells | GEO Series GSE115718 | |
Kenyon cells | GEO Series GSE119629 | |
Kenyon cells and subset of MBONs | GEO Series GSE74989 | |
Mating behavior | GEO Series GSE104706 | |
Antennal lobe | GEO Series GSE99545 | |
CREB RNA binding | GEO Series GSE59611 GEO Series GSE73386 | |
Ethanol exposure RNA expression | GEO Series GSE77792 GEO Series GSE89137 GEO Series GSE48449 | |
Gene network analysis sites | ||
modENCODE | [185] | |
SCENIC | [186] | |
AmiGO 2 | ||
DAVID bioinformatics database | ||
MEME-ChiP | [191] | |
Weighted gene co-expression network | ||
Reactome | [193] | |
Cytoscape | [194] | |
Geneweaver 2 | [195] |